Scaffold Ga0193695_1000003

Overview

Basic Information

• Taxon OID: 3300021418
• Scaffold ID: Ga0193695_1000003
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 283908
• Total Scaffold Genes: 293
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 203 (69.28%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020900	Metagenome / Metatranscriptome	221	Y
F022195	Metagenome / Metatranscriptome	215	Y
F026519	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193695_1000003164	F020900	N/A	MADDLDLLLERVRALIDAIAGGAGLPRNEVEPTLTDGYARALQLDAECLRLEHRIDRLTREIAEGREIPDGKLSGLLRHLHETEQRSIALRELLAPLRQLVARAA
Ga0193695_1000003272	F026519	GGAG	MCPTVLGRVQTRVAILIGPAILATILSLVTQNEGWIVTIGIYLLLGVALDTVVYPYLIKWQPPWLTFVLAVGEFVLLFILVKTLKPGHAPYGDPNNFLGWADWRPIGLYWVSWLMAITTKIVILPLFSLSWIENGGEFRKVGWSVAPDYQPLPVLAAIDERPSEGTLTREFSATHAVPDQKIARPLTSVHQAVPPTAPSS
Ga0193695_100000363	F022195	AGGA	MAQLDPQFAVLFALTSGVGYLMVVSGVGKNLLVWKRKRTCPSCSRTPCTCV