NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193750_1000029

Scaffold Ga0193750_1000029


Overview

Basic Information
Taxon OID3300021413 Open in IMG/M
Scaffold IDGa0193750_1000029 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86223
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (49.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003773Metagenome469Y
F007818Metagenome344Y
F024386Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0193750_100002960F003773GGAGMATVVAIITSMVVANAAQTFTTPNSAFVSYSLAAGANSAPITPVASRSLLVIGCCTTSGNRGVGQVSLLHIPSFNISWVGLESYAGVPAAITQGASNTVGTHIVFIDGNHVVDIQVASAGANTIQIHNANTITEAGNVTLVW
Ga0193750_100002976F007818GAGGMEEEKGALFQRELAKVEVIAGLQQALDLKYRRLCEAARSDWERLFGGKDPADACVSVRVAVEPLAIQATAIRGSGFLKSRRQPASKSGAKASLPRFAH
Ga0193750_100002989F024386AGAAGGMRRSIAFLAVVAMATFLSAKPAAAFPGERMPYRAAHFAGNVAYKIDNHVIHPVTHGIARRFR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.