Scaffold Ga0210383_10003092

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10003092
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14995
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000540	Metagenome / Metatranscriptome	1043	Y
F002000	Metagenome / Metatranscriptome	606	Y
F062504	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000309214	F000540	GAG	MAKKQTSSLLPKLTEIEQDLLSHMQDGYQLETDSLGGNPVLRRLKDNEEIRPLSATRNTIKAMEQRGFIVPVKGRDPLTILWRLKKKIN
Ga0210383_100030924	F062504	AGTAGG	MYTISKVLEDIILTCNKCTHIESVSQFNMSLGSQRTQAARAMQAHSRDKHPAGLLKLLPKKYEALASAAASRHAWICDR
Ga0210383_100030928	F002000	AGGA	MLKAVKQSVHRMTGHLQLISGYLEMKDYTMALRRTKETVKEMHLLEVSLTGLANVGMTVPEDGAVVVPHGSTVVGHEDVTVDVDIDEVRAVDKSQVRIGRGHDNPKTK