Scaffold Ga0210383_10000106

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000106
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89555
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F000549	Metagenome / Metatranscriptome	1036	Y
F090135	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000010642	F000063	GGAGG	MLDQGVWAEVKVGGEHLRLFSEHNAQGVQASVYNVNAKKWIAPSEPVDDIEQGKDRAETHARSYLRDVGLLELPPLEWKKSRSV
Ga0210383_1000010647	F000549	GAG	MRDDAWPRASNASFARAGLDLTAITARTASPPALELCFSTQCPERNRHESSPRLASCCGVHMRPQPQKKVARADRIQGSIVLYRAAASSQLKAQKPLPRAEPRWNMVFAVPLFLRTLLRLVFVCLHRHQGPPVTLRESISSNLSGCRPVGGRGSYITCLDCGQKFAYNHRTGRMVDFWGVHDAEALAGVRRRVAGIFSPLRGLAAAVRRWNLRIPTTQRVRPVHRLGILTKGH
Ga0210383_1000010675	F090135	AGGAG	MSAKMLFLIGALAFWLPEIFLYAWTKQALNGKLVTFLLPSGFMLTYFLLSVLRPKRTPKPSAAVFMVMGAVFLGTLAMTIGATIRGAGFWAHPGTTLLGVLLGTVIPIYAFIAATYDGSLYALIFVSILMPLIHLLFERRNWIIPPKKARVEAMSGG