Scaffold Ga0210383_10000084

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000084
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102940
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (73.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035012	Metagenome / Metatranscriptome	173	Y
F048477	Metagenome / Metatranscriptome	148	Y
F077562	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000008427	F048477	N/A	MEKLKAFQDVARINGFVDVEETDDGTVLWLKKPTTNAEDRMCVDSMTNSVTVFWATIPWKINSKTFRVVSALQEWLTQTGR
Ga0210383_1000008435	F035012	GGAGG	LSSVLLLLGFVGVLLLALLAWVLRDPRKFANPDDDLASKEELGRHHVTYFPQVRQAIGAEDFAFLASRGLPKLTNRVRKERRRIALAYLACLRADFLKLWRLARVIASMSPQVGAAQEFARLRLGLAFSLRYEIIRIKFFFGIAPLPELGSLSEVVSRLSVRLETAMKNLGESAALASKLTSSLHDGRGLDTP
Ga0210383_1000008449	F077562	GAG	MSSPKQKRSRIAAGWLCLLAVALLYAPMAGAALLVYGVDCCVGGFCNVPEHHHHRQQPTPSQDSTLMDCGHNMSGMTPCSMSCCKDPARPALIPGAFVLPPASFAPVVGEVLRPVKMASALEISRFVKPLSPPPRFPASLS