Scaffold Ga0210386_10023343

Overview

Basic Information

• Taxon OID: 3300021406
• Scaffold ID: Ga0210386_10023343
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4827
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001776	Metagenome / Metatranscriptome	636	Y
F008260	Metagenome / Metatranscriptome	336	Y
F017190	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210386_100233434	F017190	GGAG	VSGRQARPELRLMADESCQVMRLQAFRAAHQDVIIGTGEFGTWQARIPEPNGETVVTRHTLKPLLDKLDELVGQQRRLDGDLG
Ga0210386_100233435	F001776	GGA	MRFREDHPRDLDRARAAVAAWRDENPAGTPEQLVAVLGGQFHRDYGMVLRGLLFAVDRHRAREITGIGTTDSRRRQP
Ga0210386_100233436	F008260	GGAG	MGRAAAGRLEGDADAMEDLEFHWGSAYHVVSASAAFTARRRDGQGTRLADLSHAGLLRQIRADYSALAVPRDLP