NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10001011

Scaffold Ga0210387_10001011


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10001011 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20886
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (48.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F001619Metagenome / Metatranscriptome662Y
F005004Metagenome / Metatranscriptome415Y
F054194Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_100010111F005004N/ALEGPDWAARMVLFRLYYLGLAPYENARHFLGLGERSWVNWTEEVRHRCGKELLRREMFPPRRYFREMNRPVS
Ga0210387_1000101112F054194GGAGMPARRNRQKISTTIAPENAAYLRSLLKRGKASTLSEAVDSSIALARRADNRRRLEAATAAYYASLSGEALEEERQLEEALGYEASQVDFDGE
Ga0210387_1000101113F001619N/AMDAMKNFLQRLLRGGYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQSLPRLRKRSWHQIQAWRANGAARDADDAELVGARRANGPVPHS
Ga0210387_1000101126F000696GAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDTSLQVSITDTTAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDVTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLRYSKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
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