Scaffold Ga0210387_10000015

Overview

Basic Information

• Taxon OID: 3300021405
• Scaffold ID: Ga0210387_10000015
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 210930
• Total Scaffold Genes: 196
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 136 (69.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F022472	Metagenome / Metatranscriptome	214	Y
F084509	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210387_10000015187	F084509	GGAGG	MPSYGNLVPPVSVGFGDSAAVIASTDTIFPAPFKSAQVALAPSFSSGKVRAAVEIVWSAAPGVISVQLQTADTDIDAAYIQEGAAITNVNSGNVTRAEFPDVVAKFARMLIATLPNNVTATAKISA
Ga0210387_10000015195	F000512	N/A	MIEIIRETHETPESVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDARGDLIREVVELRWEPKYPQMNRWHVERWVPAEAYGSPRTWYAQTLERADGKSVAALGPYPERGEYEHCFTLQGPRREFVQLTPTIAEHVARAIEWARGRDRSSQRAKLYEREAREERAYEEWAFEVMDDEFEK
Ga0210387_1000001569	F022472	GGAGG	MFDSVLPSGSEPISVASSRWVWAARCFASICTIALGVGFVTEAAADQNGLVALISFGRWGSLSLALLYLLFRRGKNSLAFALGLGAATAFIALLPVASMVSPSGRHLAFFILVFSGILPPFANFMNGLRPQLATLGASLLWLFSISLAMLGLSSIVAFQKMAHEAKGMGKLRLAFRSGMCCALVVWLIFTLLGLFFGGFRI