NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210389_10403444

Scaffold Ga0210389_10403444


Overview

Basic Information
Taxon OID3300021404 Open in IMG/M
Scaffold IDGa0210389_10403444 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022033Metagenome / Metatranscriptome216Y
F090076Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0210389_104034441F022033N/APAAGRGGHVPDAEIHWPSVAGAPYAGQVWAIEVELTPKAAGRTARIITELLTAMQYAQVIYLTAPAARAVVTRIAAGLAPWEQARVTVRDLPPAAFMLEPPR
Ga0210389_104034442F090076GGAGMSAWSWLKLRVCLWLLRKTATVTRWLLLAAVVLVAWPVTLVAVIEYAAAWLRGWPAIRLFRTAAWALPVTAVWLIIVEVRVPGWRSAALIPGRAWGHGFHDLGGAGLAHTLALLVPVAIPAGLALAGLAWAWRTYAVTAGVGGWTASAPIIFDARQWKRQVRTAKALNKAPGAVPLLARGGRIPVGGTIRQVGHDWRPVFSLPAAASGRHMVVVGATGSGKTNLMIRQWAGWFTAALQAARAGRGNRPLLIVLDCK
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