Scaffold Ga0210385_10000165

Overview

Basic Information

• Taxon OID: 3300021402
• Scaffold ID: Ga0210385_10000165
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67566
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (77.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002000	Metagenome / Metatranscriptome	606	Y
F026323	Metagenome / Metatranscriptome	198	Y
F027913	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210385_1000016511	F026323	GGAGG	MDNQELQTSVATLADTLITTQRNLVTVSRSVWAIRISLRELHPNFEEMYLNHFAEPEQAFEAMRDNLLDGGRQLADLAHRLRAESSR
Ga0210385_1000016513	F027913	GAGG	MSHSEARNHFENARINTADAVTIEMLDGLKHSAHAIEEDYRALEQHIRTIQESAHSQEVC
Ga0210385_1000016515	F002000	AGGAGG	MLKSVKESVRKMTNHLQLISGYLEMEDYTKALAKTRETVQELHKLAQSLTGLANEAMTVPNQGAVVVPHGSTVASYEDVNVDISSDEVRSVEGNEVRAGRGGDNPKTK