Scaffold Ga0210393_10020711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210393_10020711

Scaffold Ga0210393_10020711

Overview

Basic Information
Taxon OID	3300021401 Open in IMG/M
Scaffold ID	Ga0210393_10020711 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5112
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034677	Metagenome / Metatranscriptome	174	Y
F071557	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210393_100207113	F034677	N/A	MSDFKESLRSIVDNWLTDVKRRGADLYATNEGDNVQYFSFEGKDQFRFSVEVDYALQEITVQITDPKTSGTEIENLALTAKNLEALGRLMCPVKEGEAVVPVYLLAQLAVICHGYQRLVQELDKLHGIQTTTGSVSEIETDLRRFLTPEEQRRTDNPLLTRKSGASS
Ga0210393_100207118	F071557	N/A	VKKCTATIANISPPTERDLGGVRVYLVEVTFRLEEHEDQSGAVTQACFEELGNVWGVSDDTGKLWHQDWSKSVYPVENGIFVATLPEDPTWKIGKKFPVLLPNVSE

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