Scaffold Ga0210393

Basic Information
Taxon OID	3300021401 Open in IMG/M
Scaffold ID	Ga0210393_10001486 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19634
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

19634

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (80.95%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001772	Metagenome / Metatranscriptome	637	Y
F022277	Metagenome / Metatranscriptome	215	Y
F055897	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210393_100014864	F055897	AGGA	MRISLSSWLSHLTPVLLSLCFASSFAVSADQSHYVITNDDVPPSLATSVTIYTVATDGQLTLKTKVLTGQGGIGGGYFAANRVNVLDSGNADCVYVSNAQTGEIQGISIKTLKIDGNANGSKKDTGASNGVGLAMNAKYLYASFTDFSTIGTFQVLPGCKLKFVSDITVAGLQGGFVDGMVIHGDMMVVTYGDGSIESFNISTGVPVSNGDEQNSTGSRRGNTYPSGIDITQDGHYAIFGDTSPFTIVEVSDISSGKLTPTVVYRLGNALNSSNVLLSPDETLLYISNNQSGKLTAAFFDKTTGILSKGCVSRALKGFVTDWSYTASLAFEQTTGTGGMVYIAEFGAPSSIGEIEVTSSGGKCTLTESSKSPIADPNSPGLLSIGAFPPRPF
Ga0210393_100014866	F001772	GAGG	MQKRIVFIVGTALLFVAGYLTGNRSATVAHAQAPTQGSVPKSYGRLVTAIADQIGTGLIFEDAQGVVRFVSVTGMKEGELARYDQTPTHGGIPKSYGRLVTAVVNSEGTGLIFEDSDGVIRFVTIAGKKEGELTRN
Ga0210393_100014869	F022277	GGA	VVAIPQAAPAPPKRKHTLLPVLIVLFLISYGLMCMLAVEQDRTIASQRWLIRSLLSDSSELSSIKGKMVQKQYADAQAQAKAGSRSQAQTPLTQAPLTQVPMTQNPMTQDKAGAAAQSSHNAGKTRKTMPPKPPLGISDIVDGRRIVKTI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210393_10001486

Overview

Ecosystem & Geography

Associated Families

Sequences