Scaffold Ga0224422_12032967

Overview

Basic Information

• Taxon OID: 3300021400
• Scaffold ID: Ga0224422_12032967
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2300
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F052997	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224422_120329672	F052997	GGAGG	MSYYEEVYLKRLNRYGIDFQSRMQRQREENFKLQLKKSVYYIDFEYGGETHEAELPPYKQNETKDLHYLLTDVHLDMPNGTILMLPDKDGERVPWMIYWLEDYVASGYNRYIVLRMTHYLTWKNREGKKCNAWAYFYGQEDNMLKDELKSRSRNKALYTENLKLSFFITPRNVNIRKDDYLEVGNDELKEAYVVTGYDIQSTPGVEFVSVDPQYIRDLTEPPIQSAEDSDSDFFWINKGGEA
Ga0224422_120329673	F041054	AGGAGG	MSIRNCGDIGVNTQYIVKRLIANQNLLKLLYYTDKDPLAGDDLTQDQIQNEVFEKLIKVIPRIGPKETAHSIITITMQRGTGLAANGEFKNVLVKIEVFVPMTQWIIKNSNLRPFAIMGEIQNSLRGKKIEGLGKMQGGDFDLDFLSEEMTAYLMTFVITSYD