Scaffold Ga0213868_10047252

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10047252
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3021
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F054773	Metagenome	139	N
F091965	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_100472524	F004952	GGAG	MNLTHTHEFLITHITDSGTGFAVRTDNGESVHISPRLLQQAHANLDDICIGIIVQNAIEENRERTPWVAAYVQERRAARDVLGLAADAPAEAVQAPTEEPKPIDWADVHRKILSMLQSDDVTYCETADIADVVGVEPRKLSQHLENMHARGEICKAYVAQRANQQRATLVLWSINADVYK
Ga0213868_100472526	F054773	GAGG	MTKQENIISIVSEAVEKAWEGSASAKEASEKYLVMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
Ga0213868_100472528	F091965	AGGAG	MDKRYEDPTIAKIYLTWRNRQNMVRAEAKLVLQIKAICRSFRDGDIKEANKLFAQLKKGEGTMDEYAATKPLFEARQPLVES