NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10017601

Scaffold Ga0213868_10017601


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10017601 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5669
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007366Metagenome352N
F011489Metagenome290N
F013089Metagenome274N
F023580Metagenome209N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_1001760115F007366N/AMRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTETSNEEKIKAKLLMEEIANADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKN
Ga0213868_100176012F011489AGAAGGMDSGNRKGWNSFLTKHYSKLVRIARRWTDNPSDLVHHTYLRCIDKRFPDGDNETALGYFVKAMYNEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSGVGESTLYRSLHITRKILKDVLRNGTKED
Ga0213868_100176016F023580N/AMNNIKLFLVRNYGSTLNAAETLDVTPNTVRNWCGRSPRNILKHLPEISESCGATYAEIVEEVLICEREGVI
Ga0213868_100176018F013089N/AMGQSKIKTIQPNGTYDSQNGLMYKFEVELESGECGEVSAKTENRWNVGDEVEYDITESKWGNKIKLTKPGFNTNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRNTLISKL

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