Scaffold Ga0213875_10000001

Overview

Basic Information

• Taxon OID: 3300021388
• Scaffold ID: Ga0213875_10000001
• Source Dataset Name: Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2793540
• Total Scaffold Genes: 2688
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1602 (59.60%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003563	Metagenome / Metatranscriptome	479	Y
F005328	Metagenome / Metatranscriptome	404	Y
F013261	Metagenome / Metatranscriptome	272	Y
F035664	Metagenome / Metatranscriptome	171	Y
F046215	Metagenome / Metatranscriptome	151	Y
F064923	Metagenome / Metatranscriptome	128	Y
F075093	Metagenome / Metatranscriptome	119	Y
F084482	Metagenome / Metatranscriptome	112	Y
F095039	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213875_100000011175	F064923	AGGAG	MKAIRLIAVAVIGISAALASMGPARAAAPILIKSCTIAKPKPMSHMAGGTNIVYVVLGRRTAASITFAVGYRNASSHYLRRVTDVGTFSPGATISHKLTLYNDVTYAGAQTTMCAPVEVKWAGGTMWMAPSSH
Ga0213875_100000011292	F035664	GGAGG	VEIIGTNLTLSLGAWRLRFVLAIEEAEESPKEKIRPPHRMRVVPEDRYARRDL
Ga0213875_100000011616	F095039	N/A	VTVANFSKRFKELVRGLNDTELGYILGVSADAARKMRTGDIKSLKLQAALRLAKALKVSPWYLAGEPEPAIPLSAGPPAEAMGRKRRQGGRRELERTQLETAESTLLLHDEVVELSARVRRLEATVEELQSQATASSSP
Ga0213875_100000011701	F005328	GGAGG	MKRLAISLIGGIALVAVSWTAAFASAPNLTGTWNVQQTGANGTSTSTVTLQQSGNGVVGSNAANGNGFTGTFVNDTQINGKWHGPGGAGWLTVYVSANGHSFNGTWGYNGRAANGSFVGNKVLPPSPITAKGSWHVTGAGGPMAFLGTMRCTESGPTVVCHTGPILINGKFVAKDKVRAQWTSPTGSGWFSFWFNGDNNSFNGIWGNGKDTTPPVGRVVGQRAL
Ga0213875_10000001206	F046215	AGG	MCAAHKKKIVTAADVLGAEPKWPKEPREWEKLVGGNEVVYQDRHVVVFHDPVDEEHESQRLPGEIRLTLLSKKDGVDTLMDLGVADETLNAAILHAIQQAAFHLGLEKKGFEVRAHIYPPLQHRPAVAFKIRAGKPPKKSGAPAA
Ga0213875_100000012160	F003563	AGGAG	MNGFVKCAGALVALELCSACTGSSAIAPSTVAPDVRYIGRTLAVNGRPVTAAEVRTLPRFATIAPDASTKAKHFEYIFNDYGTYASIFDYPTSVKEIGSIRGDGGQGCTNVLYGYGKKSFWDVAGDTDIVEYDVLKKPIKTLSVSVGMPSSCAMDSSGDLAVGILSGAGGGDIVVFKNASGSGTVFKSPLAREYFDGYDENGNLFFDGFTVDSQFQLDELPQGSTKVQKIITSNHVEFPGSVQWDGTYLAVTDQIANAIYRYTVSGTKATLEDTVSLSTSSDCAQTWIVKGLIYCADAGNDDGEVFKYPAGGSAIAVFTGNFDVPLGTVAVRR
Ga0213875_100000012604	F084482	GAGG	VELWLEAEIRIRREDALESARRRRLLGRDAGGRSRTVRIGIANSAQAISDALAAVARSLRNGEAA
Ga0213875_10000001419	F075093	N/A	MLRRLLVATVAGAGLTACTHSDYMPNVIQLSPNGTASNPVKQSVTSSFTLTAVEDGYTGQFTAQTIVGECWVVQSPVTSGGAWTVVPQGSTCNSNHDVEKIQVKDTNGHSADTYIQSV
Ga0213875_10000001814	F013261	AGGAG	MLGSQVRRFCSCVALVSTAWAMMSLSASAQPTDYHYNTAMTQVYGSQYPITGRLDVQVFPDGTLRGYYHTSFYKLYIPVTGGRDADYIWLDIGPSSVDLGLGAGPQGRLHVVATVSGDGSIRGQVYPESAAVLSGLSAQYGFGSSPPESAGNQYLFTALPSTTVDPTPSP
Ga0213875_10000001843	F003563	AGGAG	MNRFGLARYASALVALALCSACGGGPSVAPTTVAPDVRYVGRTLLVNGRPVTAARLNPLPRYATIVPDARASSKDFEYIFSEYGTYASIFDYPTSVKQVGSIKGDGGQGCTNVLYGYGNKFFWNVGGATQITEYRVIKTPIKTLSVNYYFPSSCAMDSNGNLAVGILYATSSFSSGGEVVIFKNAKGSGTAYTTPLDEEFFDGYDNKGNLFADGFTGDRSGFALVELPKGSTKFQTITTSNSVNFPGSVQWDGTYLTVFDQNANETYRYTISGTKAKLKGTVSYSGSSDCAQTWIVTGLLYCGDAGNDGGEVFKYPAGGSAIAVFTGKFDVPLGATAAAK