Scaffold Ga0223845

Basic Information
Taxon OID	3300021387 Open in IMG/M
Scaffold ID	Ga0223845_12380855 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021387 Open in IMG/M

Scaffold ID

Ga0223845_12380855 Open in IMG/M

Source Dataset Name

Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	182986
Total Scaffold Genes	216 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (29.17%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

182986

Total Scaffold Genes

216 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (29.17%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

New Zealand

Coordinates

Lat. (^o)

-42.26

Long. (^o)

171.6

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y
F072445	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223845_1238085561	F051210	N/A	MNNYKTYMERPEMMEALINSSVSVDDAKIRSNEYAKMFSRNDELKDFFGLSNSSNLLQKTFSGYAETPLMSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDINTMGGFKFDVNVTASASFSALVGRKLIPGTVRVKVKTATDSFELIDNGQGAFMAVSGKITAGTLNYLGGRIEFTLATALTGDATKESIVIVGKEDVTGTPSNTNGASNAHANDKRFIAKMQQIGLSTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKAINYKLVSTLEEGYEGDVLVDLDLSQTAMTGQFYDYQSRINLFDAYLVNVETALASKAIKAVSTTAYVAGVNACNQFTKGRGIGKFEKNTKMTYINDLAGWYDGVPVLRSNDIAEENGHGVFYAIHKTADGQMAPLARGIYMPLTDTPTVGNYNNPTQMASGIYYQEGTKYLAPELVQKVDFKLG
Ga0223845_1238085577	F071326	GAG	MASEDMASKSLDRANKLYSIGMKQIKLQLKLQGTDFIVLRPKNNSKWKQVFGGTYSSSSTLENDYEQFSTRLIVNLNEFRDVWNRNRDIIESYSPDGSLEVGDELQYTRDKRTFRFKISMKQAYSEVADVLYVYTLSSIIETLDE
Ga0223845_1238085580	F072445	N/A	MATVTDLVRGNKGRMSFIDYNSTYRDNNKEFLRGDMWEFQFVNPPRIVYYPGDDIVNARLNSVQVAIDNSVNGFEKRMRGNYVIRQQTGQNTSGSLSLAFIDREDQAISYWIDDWRQKISDRDTKYSFRKDDLVCDCRMIITNSSRIDVRTLDFYNCVIMDGTLDESGADVDGTDRADVQLQLAFEHYERSWDNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0223845_12380855

Overview

Ecosystem & Geography

Associated Families

Sequences