Basic Information | |
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Taxon OID | 3300021387 Open in IMG/M |
Scaffold ID | Ga0223845_10016747 Open in IMG/M |
Source Dataset Name | Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18219 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (40.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | New Zealand | |||||||
Coordinates | Lat. (o) | -42.26 | Long. (o) | 171.6 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F102209 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0223845_1001674711 | F102209 | N/A | MKIPKINEDESLAAWRERLAQEFNLDAKMQELIREVSVTSYIHGTNVMLDTLKKEWKL |
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