Scaffold Ga0213876_10000053

Overview

Basic Information

• Taxon OID: 3300021384
• Scaffold ID: Ga0213876_10000053
• Source Dataset Name: Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142404
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (79.80%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010270	Metagenome	306	Y
F014784	Metagenome / Metatranscriptome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213876_1000005340	F014784	AGGGGG	MADWKAERAGRLRDFFGLEPNAELLAPEAREFEVPPGAAGALGHFNVEWHVVPRAEAVPLDDKYAARLYPAASREFTRPREHGGSYREQLFRGHARHQGRVVGVETTQKPRYLPGNKQFYGTPYGHDPSADPFAPYLGRAGMVNGTRFAHNYLSLREFVRVVNEDWRARGLMPEGYRATICPPAVFNLVGALFHPEWSETETLELGFYRDEQGNAKCYAVGSNGPGDFSYVRGVEGEEEWALAGFRVALVPE
Ga0213876_1000005358	F010270	GGAGG	LAGILRTALHAAASPKNRPEVKTDGLENLDKKTALILYAVAEAVLGEGFLQKAPKFVETVDDYLNYQRASQRDLFLTALLITETRLLSLITVGNLRGFSHLSLADRRKVLDKIRSGSNEQNRNIYAALVNVSAATYYASDLTWPDLGYAGVSVDHPEILNRPPPVPWRPGDTRPIEP