NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10024031

Scaffold Ga0213864_10024031


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10024031 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2797
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031778Metagenome / Metatranscriptome181N
F045582Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0213864_100240312F031778AGGAMKDGELSKDSPDLESKQGNPLPSNLVEVETPSETWKTEFKDKISSLRINGEDVSKIHRAMKELREMRDSSDRTLRRLILLTTLLICSGLGVGVFALDYLLQFNAEKIDKVIDLNLQAIEKSREGMIKIPLIAISLLEKHPNEMHWEANQSIWTFRDTFSGKRKKFSPDYMFYSPGILEDLKQEFGLFWNGDQWNWPKGFEPQEY
Ga0213864_100240314F045582AGGAGMTEHSLDSKESNSIEVELSPESWKTKFHDEIKTVRLNGEKIAEIKDLMDEMKAIKEKNDRTIKVLSIAIISLTIIGLCFLGFGVSYLMRFKVDKLDEVIDAGVEKFDMTNKTFIHTDAFAILSSPLHPLLWDRKNQGWFVQKPSGAQRNFYDSIIIPQKAYLELSKSSLHWKQGKWHAPKGFPSLRKNEN
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