Scaffold Ga0213861_10022219

Overview

Basic Information

• Taxon OID: 3300021378
• Scaffold ID: Ga0213861_10022219
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4426
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F011192	Metagenome / Metatranscriptome	294	Y
F047975	Metagenome / Metatranscriptome	149	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213861_1002221912	F059441	AGGAGG	MKTWSSTITYSVFDMGRECETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE
Ga0213861_1002221913	F003976	GGAGG	MSRTYNDYYFEKEDVLDTLDKLEMSVRFLNVWVNKPMGLENARYVLEKNANQEFNWFSRDMVKELLEEDDDENN
Ga0213861_1002221914	F047975	AGGAGG	MRITKEEWAENTADGMDLKDLYRIAYDVMLDSVKDMSNKEFKEYLIECGYEEVDDDS
Ga0213861_1002221915	F011192	AGGAGG	MMTAKEMTDNNFINFQDDFYNLLEKYGVSSIDIEHPQFETICNIRNKVVEFIEQETWEEDDEV