Scaffold Ga0194130_10217353

Overview

Basic Information

• Taxon OID: 3300021376
• Scaffold ID: Ga0194130_10217353
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8369
  • Long. (^o): 29.6087
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F020527	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194130_102173531	F020527	N/A	SLTKLYTEELLPGRRATGVTAAYEELLGRQATEEEKGKAMERFQQGYYSSVQDLRDSLSKSQEYQEKFNQSYLDNYYDTMFGKQTVDQAGKKTGKRNFTFDKNLLPTYAETTKGRAGVELPTFADQFQGTPAEIEEQLQNVRETRKYLYSAGLTNLQGEIDKETQKLKNEGTKEIAKVSAQGDIYKQLVGAFSF
Ga0194130_102173532	F001190	N/A	MSFTSTKGQSADDDYFDINKFEQLLERLEASKGRQQRQKSTEGRRDIYAQGLASMMSNFXFKYHL