Scaffold Ga0194130_10066404

Overview

Basic Information

• Taxon OID: 3300021376
• Scaffold ID: Ga0194130_10066404
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2482
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8369
  • Long. (^o): 29.6087
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F045692	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194130_100664041	F002333	N/A	RHDGSEQIYLRTLIKAAFQQYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDPAKITTLLQSDQTDLGHLVAPDGLRLPNRPLDMDAELDDSKEQQPLFGEPSCSCGSFQRQLNNLSAFQEEIQGFKPGCIHLTWFNKYRELLCKRTETRNASPSGTPEKCVAWWYAPPSDHTSDGRFVLLHTKSGAQAPLSHWRTYKPQEVFTQHHAWDLFFNMMEAGYTPFPGTSLPQLKAAVKKQ
Ga0194130_100664046	F045692	N/A	MAHITQTKLEDLNIIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKVDRIHYAMAAHEDAL