 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021376 Open in IMG/M |
| Scaffold ID | Ga0194130_10018264 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6108 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -4.8369 | Long. (o) | 29.6087 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003267 | Metagenome / Metatranscriptome | 496 | N |
| F009126 | Metagenome / Metatranscriptome | 322 | N |
| F018160 | Metagenome / Metatranscriptome | 236 | N |
| F044982 | Metagenome | 153 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194130_1001826410 | F009126 | N/A | MAITVLSGSPQAATPVYNKMLFKVSGSLIAEPNFRYICDVKNAAGTTTLARLKCDKLPTTNFGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLDFTQEFGSTPVVSGNFTTVSGNIAFAGNLEQLELADWSGGVYFPSGGGFNDGISQSLATNVGRTV |
| Ga0194130_100182644 | F003267 | GGA | LCNFALMKLVHYYHIYCGGGGQWQLILNQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKEILEGSLIAPKVKVVVTRTNAYEQATLTEMYRASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERAIAELENVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPIREHRWQAEHWIGKAEGMTVYNACKGWPAPDKFVVTF |
| Ga0194130_100182648 | F018160 | GAG | VTNPLAGYGWLMVVWRMANKDVLKFDAIFAMKAVEFLNYAMLIHDILEAERQEAERMRRR |
| Ga0194130_100182649 | F044982 | GGAGG | LRGRTFTDMEFDVFVGGSGKKLTDVQRAALADFGVTLEEGAIDNKSYALVKKWLQGVIVMAKQNLAKSKAIASNSLAASIKFEPIALTDTSFVVAIVANDYWKFVDLGVKGAKSSGRAPNSPFSYRDKKPIWKHRPPVRKIQEWIAFKSIPVQGRDKIAGNRALAINISNKIWREGLRATNFMSNAVTEDMVAVLTENIAEVLGKTISVATSR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |