Basic Information | |
---|---|
Taxon OID | 3300021376 Open in IMG/M |
Scaffold ID | Ga0194130_10010436 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9309 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (38.46%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -4.8369 | Long. (o) | 29.6087 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006260 | Metagenome / Metatranscriptome | 377 | Y |
F008080 | Metagenome / Metatranscriptome | 339 | Y |
F010397 | Metagenome / Metatranscriptome | 304 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194130_100104361 | F008080 | N/A | IPGPTKNQTKEQFEEAFENSEDCYCIGDTFETLAYFDLEGKSNSIDVYLGGDDNIENNEKPVFVTSNWSDFEFEKGGGCNFIPQEPEEVGQVNVWWSHDMKFNYIYFWTDVDEFDPDKLKVQYGMDQNGEKYFETFIYDGEYPDDYNDFGDCGTGYNSPEFVYHSKQKFAKSNNH |
Ga0194130_1001043610 | F006260 | N/A | MQKDLYLNKISEKIIIQADDLKFDGKNVIVPSYWVDSLCEYIKNYKLEGECQADIEDYKTFRNFLWDIQEYKNKGN |
Ga0194130_100104368 | F010397 | N/A | MNISEFERTKPVITMRKIEDLILLIEQEMVKTEILYKDRVRSLEDISLLLKDVKNSFKKG |
⦗Top⦘ |