NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194130_10010436

Scaffold Ga0194130_10010436


Overview

Basic Information
Taxon OID3300021376 Open in IMG/M
Scaffold IDGa0194130_10010436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9309
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8369Long. (o)29.6087Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006260Metagenome / Metatranscriptome377Y
F008080Metagenome / Metatranscriptome339Y
F010397Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0194130_100104361F008080N/AIPGPTKNQTKEQFEEAFENSEDCYCIGDTFETLAYFDLEGKSNSIDVYLGGDDNIENNEKPVFVTSNWSDFEFEKGGGCNFIPQEPEEVGQVNVWWSHDMKFNYIYFWTDVDEFDPDKLKVQYGMDQNGEKYFETFIYDGEYPDDYNDFGDCGTGYNSPEFVYHSKQKFAKSNNH
Ga0194130_1001043610F006260N/AMQKDLYLNKISEKIIIQADDLKFDGKNVIVPSYWVDSLCEYIKNYKLEGECQADIEDYKTFRNFLWDIQEYKNKGN
Ga0194130_100104368F010397N/AMNISEFERTKPVITMRKIEDLILLIEQEMVKTEILYKDRVRSLEDISLLLKDVKNSFKKG
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