NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10022411

Scaffold Ga0213869_10022411


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10022411 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3546
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004712Metagenome / Metatranscriptome427Y
F053313Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100224111F053313N/AVEQVVQETPVTNASTYTYTPQNTLGTAATATEGTQVHALVGIIEDVVRADDTDAIPRPVSSASWIPAELTTAANMIVDNTEELAADVTEFINSSFKVLDYSKAKCRRDTNYLLDAFSFDLNFGGNSASRWNADFYFWNQIYRLPEDQRTPTAKSYRQLGKICKDIVLGEYPGQSVLGELGTSVESTKVEGLANIFYETQLYNDTKYLPVLEEPDYTYSNSIFTDAQSIIGQRRKELQKDTVRFVNSEYDFIDTNLTRRDARNLLTAVVNDFAYDKFNPDVPQPTYSDNGSQNAVRTYTASFFNYDGTHVFPVFNPSDSSLGLKYKGSVATFGDLSSVTGMKPKWAYIVATDYTTSFYAGDIYYWDGSTWVAAGTNNTDLLDAFTGAWDKMKGYINTNLSPDVEHQNMITGLFDDCLKDNVLRPQTLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGAAISAIASVLNENGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV
Ga0213869_100224112F004712GGAMTVQTITTSQAPDAKPVAINKIVSTNWQILADVPQYKVPELVFGGSETVEPGVGEIISPLVLCNITASTVLIDLRFHREDVNAEFYVLRQMPIPAYETIPVPLNGQFLKSGDTLEIMADTDLAVHATLSFTQGQSEEDDVV
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