NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10010324

Scaffold Ga0213869_10010324


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10010324 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5610
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006798Metagenome / Metatranscriptome364Y
F017499Metagenome / Metatranscriptome240Y
F087903Metagenome / Metatranscriptome110Y
F096215Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1001032410F096215N/AMADFKTGDKVAWVAEMVCVPHPEGKTDRNGEVLPVFRDKKMTGTVVNSCYDDRYTIRPDGTTTPKDIPSYYDKMVAGRKLSKI
Ga0213869_100103242F006798N/AMDLRFITEDEVVNFIDGMDEVSTDSILSDPAIVELLEGSVPQQIADHSNPLGTIESFLQLFIDREEYEVCADLVKAVPELCKY
Ga0213869_100103246F087903N/AMINTGREWDFMEDEVQIEEILTEANAYNLKQEVITTAEVFMKDDPELNKVIAYEMAYMEWIK
Ga0213869_100103248F017499N/AMSRYNSRMHGITNDVKVDLNWGFDHVLGYWYDIIETRDGEERIVEEWNSAMGGSRSKMLEFLIKYNCPEDHRSAVGLDMQF

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