Scaffold Ga0213869_10001059

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10001059
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21160
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023218	Metagenome / Metatranscriptome	211	Y
F057374	Metagenome / Metatranscriptome	136	N
F058045	Metagenome / Metatranscriptome	135	N
F070097	Metagenome / Metatranscriptome	123	Y
F089432	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000105910	F089432	N/A	MSAKKWLNDNEWPDLPIDSSAYSHYTYLSEVMEQFAKEYHEKQLVKYAIVQKSKFKKYL
Ga0213869_1000105933	F057374	N/A	MNKVFLFILLLTSSLLSSQNFVGENFRLSADSGNVVITFEDQNSDGTYIGGVLTKSFGKLTITKKEFQTKFIPNLKKISGKKEYEIVEDSYRLDKYSFDTESVFLQVGNKIGSITTKEIKKLRKL
Ga0213869_1000105936	F023218	N/A	MIFPSNKRKARYINKQLYLVHAVIPIDRVKNPTMIKEWLGVDTAFKVQREGAYWFCELVEEPEWEDVN
Ga0213869_100010597	F070097	N/A	MRLQYITKEKLKWINIFFDTIYKYYCSGHNKVYKWELQKELKFLNYMKEVGEYTHDDADKLNSIKELYKYIKNGQV
Ga0213869_100010599	F058045	N/A	MEITNQLKHQLKAKEYSSLPQKIMMERWEASGRDLHTYWNSIEWDSSWLKHDTPEEKYAKDVTREFNRHPFRDYIEKPKEYIEL