NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000673

Scaffold Ga0213869_10000673


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000673 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26918
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (41.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012227Metagenome / Metatranscriptome282Y
F019682Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000067311F019682N/AMLIVLESVGSVFDTKEGIIYPQTEDGGYDKEFSISIDDEEVSLDWWYSLSLEDFNIVKYGVSTESHK
Ga0213869_100006735F012227N/AMANLQEIANKFRVSDNFLNSKEDGLLIVASSLNDIIGELNRNDKRGIDENQKQSLITKLEKLGEFCKEVKNSTF

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