Scaffold Ga0213869_10000314

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000314
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39896
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (23.81%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007723	Metagenome / Metatranscriptome	346	Y
F011405	Metagenome / Metatranscriptome	291	Y
F018708	Metagenome / Metatranscriptome	233	Y
F022080	Metagenome / Metatranscriptome	216	Y
F026279	Metagenome / Metatranscriptome	198	Y
F031120	Metagenome / Metatranscriptome	183	Y
F031507	Metagenome / Metatranscriptome	182	Y
F032238	Metagenome	180	Y
F051135	Metagenome	144	Y
F070097	Metagenome / Metatranscriptome	123	Y
F072235	Metagenome / Metatranscriptome	121	Y
F073532	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000031410	F031507	N/A	MINTKIKFSNKYGQIQEGIVTDDNYQCDFDPDLNGCVRVSVDYGSKSIGTINTLIDKSQIIWA
Ga0213869_1000031411	F022080	N/A	MINETHVGLVRMNESKTELYDSQYMLSKWERNLGDTLNIDGTNWLVGIIGDTKNDVISALNNIVKKHNSIINKKNYQQRKKEKMVMNQITNNIMKELNL
Ga0213869_1000031421	F072235	N/A	MTNEKYTEEVLIKSHSLGIKDEVWELAKELKEQDRTLDMHGSIQQAFEQLTK
Ga0213869_1000031425	F073532	N/A	MFRYPNFCGPVEYINKTPYQIVARYPITRVKDAQLIKDWLDCDTIFKSNRQNIFIFCNEIKDVEWEVI
Ga0213869_1000031437	F026279	N/A	MNKVYVRKCERFTQWEASEPIEVDVEKLRNCVPPYEGETEKDLLDYLQENVLYNYDWAEDETNKEVYGEDAAYDLTFESCDMEVYSDTRDKYAQEWLDVGEPNEEWRKMGRFEVRETSVDNS
Ga0213869_1000031444	F011405	N/A	MKVLIKPQVKKPWSKEMYDYNDKVADLMKENIIKSIVKYQNNFDKLNELMELCGGIKYGDGYTIDDLYQDVHDEVDNVQNYWLNEEYPYAVKQGLVEPVLYDFVGYDK
Ga0213869_1000031447	F051135	N/A	LQNGFNMTIKDYKTFLNSLPEEFDDFEITHREYTNINDDSLNAQEVSVYSVHIDESQKKACNMHQKSYELYQEFTNMEKIEVPNVRIPMSKLE
Ga0213869_1000031457	F031120	GGA	MESTLIQVLAGYGGLIWMSTSFPLYILYILWRNNWKVLHSVSDSWYVLKQKERNEEILFTIFTYFLGIGTILQYYLNPIFFIGGMGFFWVGTQTQFRGESIKETIHYLGAVLGIGGSLIGLSLIGVWVPLLIMLVGGGIMKLLKINNFLWWVEILAFILVIGGLWYM
Ga0213869_1000031472	F032238	N/A	MSKILYMDATIQLLGKKNQKKTQKLIDENEVIHTDSVSYLSVDNQPTKIRKTLDGRTLVELDKPMALIVNTTVPHKWILQDTETGEIYRGTTEHTIGKQWEKIIEINED
Ga0213869_1000031474	F018708	N/A	MRNNATFVTKEQLKFLKQMDNWLANEPWQSEVELKTAMEVREMITKIEEKGYYYEGEAELLNLMRSEYIEHTKKTKKKRL
Ga0213869_1000031475	F070097	N/A	MRYTKLDSNKLKWINTFYDTIYDYYCKGNDSVYLWKLQSELKFLNYMKTAGEYTFEDADRLNSMKSLYQHILNEK
Ga0213869_100003148	F007723	N/A	MIKAIKSKMLTYLFKDWVMNETDLETLKVSKQFIKKREIEITGHIPVLGFRSHLPQED