Scaffold Ga0213869

Basic Information
Taxon OID	3300021375 Open in IMG/M
Scaffold ID	Ga0213869_10000071 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021375 Open in IMG/M

Scaffold ID

Ga0213869_10000071 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	79458
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (11.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

79458

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (11.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F020206	Metagenome / Metatranscriptome	225	Y
F055007	Metagenome / Metatranscriptome	139	Y
F084252	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000007143	F002047	AGG	LPYITKQDVLDLIDEKYLKKKDSKFVLTPKAKLFIVRMDNYFIKAKKKTDIALMGKNSIDNINTYREIFPAKKLPSGKPARNNVKALSDAFRWFFETYDHTWDDVMKATSMYVNEYRDKEYMYMQTSQYFICKQDKHRVKHSTLADYCDMTIEGISTEDEHFKENVV
Ga0213869_1000007153	F084252	N/A	MCKPIIKCSRCSETFCSGLDYRWHFDKHLDEWYEAENKQEYIKKTTQWEK
Ga0213869_1000007178	F005243	N/A	MENTKTNPELSEKNPQLTKEQLAERREEITAFYKDNIPHLEVQADYEMLLSAIEKARAERMQAQMYMAQQYAAQKEGGQPSTPEADEFKAAMDNAMNPS
Ga0213869_1000007180	F004866	N/A	MALVNKVDLKMKVDMDISIQYQIMTYCFFNNILISNSDLKFLAELSKNKDIELTKFCLKLVQDGVFKSPQSARNAITKAERKSLLIKKGNNKKTIALQKNISVQTEGLVLLDYKILGSESKEP
Ga0213869_1000007190	F020206	N/A	MALDIKKQNKTYEFSNSSVSKIIASKAVGLDVISRNHANDAAAKASGLVKGDLYHNAGDLKIVIS
Ga0213869_1000007195	F055007	N/A	MANCAHCNKVFTCGCQKASLGNGVIVCKQCKAKAEANVSTSRDLNLELAKQQIQDLRNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213869_10000071

Overview

Ecosystem & Geography

Associated Families

Sequences