Scaffold Ga0213869_10000017

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000017
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 153457
• Total Scaffold Genes: 210
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 112 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026005	Metagenome / Metatranscriptome	199	Y
F048639	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_10000017137	F048639	AGAAGG	MIETKNMTEIEESYHNAYRLLIGTTDYDKLAAQEVFYLPANHEDPEVVLRYYESIEDYEKCAKIVKQKLGSR
Ga0213869_10000017138	F026005	N/A	MSKLDKKTQGKVNTITSEIEGFMLEFPPQYETDKESMLGYFSNIICQLDTDIAIEVMKDFGKAGEHQAMAIKVNYGY