NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10044228

Scaffold Ga0213865_10044228


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10044228 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2478
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019648Metagenome228Y
F032280Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100442283F032280N/AMADEITMKAINLLREADPSMDEVDSLDKFIAHQQEVVKMYKQFKDHPRADELKPRLTVFEESAFAFTYVYTMMKTYKREKMLANARELEMANAVIELKQELDILTKLDKGD
Ga0213865_100442284F019648N/AVTKKELNLLDRFASKYKIDCVPSEGKYDFWDFTYEWDDRKFYCEMKQRNFTLDFARDRYSEGILLEMHKYERILRRTKNEKASQGLYVNFFDDDSVLIYNLNKVSIDKWFWKTMPETTDFGRRNFIYKYITFLDYDKGKVLYI

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