Basic Information | |
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Taxon OID | 3300021373 Open in IMG/M |
Scaffold ID | Ga0213865_10004433 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8400 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041217 | Metagenome / Metatranscriptome | 160 | N |
F059018 | Metagenome / Metatranscriptome | 134 | N |
F070161 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213865_100044335 | F041217 | GAG | MTPDYSSLPFQIDWNHLVKSPFSAAGTTWKPGDVFDWQRRGIPWQTVLTMFNQGFLRQEPPSEEPIKVVVGDGLDELNSDELAAIVDNINAKVKQFTKTEREYNTKKCKASTITKKQRGHIRTWRNSPWSDWEQA |
Ga0213865_100044337 | F070161 | GAGG | MSFNARDLLKLVQDFGETLTLRKVTTDGTYDATTGTLSGSATTDYSFTGYFYNLAEGTFGLSQTRKGRRACVIPAKGLTATPDDQDQILGNGDTVNITTVRTIFSDGQAVCYLCEVFE |
Ga0213865_100044338 | F059018 | GAGG | MTVPVIKVSPALKAKLAEIDEMLEDAVERKMTDVARTIVLASPVDTGAFVNSWSFKDNLGGGRSKSSENKPRGRDAGAERGKALNNLVNDIKKTVEVGSPGGPVKKGISLQADNYYFLNRAPHARDVDNNPKHQVIDKVIRQHGR |
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