Scaffold Ga0213865

Basic Information
Taxon OID	3300021373 Open in IMG/M
Scaffold ID	Ga0213865_10000994 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021373 Open in IMG/M

Scaffold ID

Ga0213865_10000994 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18752
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (85.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18752

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (85.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F015812	Metagenome / Metatranscriptome	252	Y
F059441	Metagenome	134	N
F061778	Metagenome	131	N
F078570	Metagenome	116	N
F095310	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000099410	F078570	AGGAG	MSNEHVILEGKVMWAFLDKPNHFDYYGLFLIPNKKSLQVVKENNFYNFKEEHGYVSLQNKKLDFSIYDKENNLIMNLDYYLGNNSHIKVRCKSFIGKMVNQKCLHLESLQIIKHVKIKSDINWETK
Ga0213865_1000099411	F015812	GGAG	MNKTLYKRLEDICAREYVINKLTEDKFRTFVDFLYDDIRTWDNPTEVSDNDVMYRIEEHLSHMVARILTNTHTGTTHD
Ga0213865_1000099414	F095310	GAG	MLHGMCKTIATFQGEVNNMKMFLIKLLTTLAVFLTMYISIVIVNDDTVENTDEIITLNRKVQSLEETLQAVKQQQEYLQIMHKGLRDALNNRTVEVDRLVEQAVDDKFNEQSATGGLGVLTGEQVIEEVVE
Ga0213865_100009947	F059441	AGGA	MKTWSSTITYSVFDMGRECETEEDYIEWVKETFREDHNIELRDDEITNIQREELYNE
Ga0213865_100009948	F003976	GGAGG	MSRTYNDYYFEKLDILDTLDKLDMNVRFLDRWVDEPEGLENARYVLEKNANRKFNWFDRNMVRELLEEEVR
Ga0213865_100009949	F061778	AGGAGG	MNKYGIAVHYEEGFTVEVTATNVDEARKVAEDYVNEYCGVRESFSDTQDTGNTYLKTYHRDCWIVGER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213865_10000994

Overview

Ecosystem & Geography

Associated Families

Sequences