NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10000566

Scaffold Ga0213865_10000566


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10000566 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25027
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (27.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009843Metagenome / Metatranscriptome312Y
F019648Metagenome228Y
F032280Metagenome180Y
F046021Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000056618F032280N/AMADEITLKALCLLREADPNQDELNSLDKFIAHQAEVVKMFEQFKDHPRANELKPRLTVFEESAYAFTYVYTKMMAYKREKLLADSRELEMANAVIELKQELDILTKLNKDE
Ga0213865_1000056619F019648N/AMNSTELELLDRFAKKYDIDCKPSESQYDFWDFTYEWDDRKFYCEMKKRNFTLDYAKENYTGGLLLEMHKYERILRRAKNEKGSQGLYVNFFDDDKVLIYNLNKVRINKWFWKTMPETTDFGRSKYVYKYITFLDYDKGKVLYI
Ga0213865_1000056620F046021N/AMTKKKLTPKYNDNKSIRARIDKLLEKNTSNVANSGTGSKLDVGDDSKVKEAWQEIQAKIKEIDPVFYDIIKER
Ga0213865_1000056636F009843AGGMKKVELGGQERPIRFSYLALKDICNKCGLKLSEMNQLGSEIDHIGIITFFGLKYGAKKIGEPFNHKISDIEEWLDNEDFSKINEIFEAFQLDQPQSEGK

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