Basic Information | |
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Taxon OID | 3300021373 Open in IMG/M |
Scaffold ID | Ga0213865_10000566 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25027 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (27.91%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009843 | Metagenome / Metatranscriptome | 312 | Y |
F019648 | Metagenome | 228 | Y |
F032280 | Metagenome | 180 | Y |
F046021 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213865_1000056618 | F032280 | N/A | MADEITLKALCLLREADPNQDELNSLDKFIAHQAEVVKMFEQFKDHPRANELKPRLTVFEESAYAFTYVYTKMMAYKREKLLADSRELEMANAVIELKQELDILTKLNKDE |
Ga0213865_1000056619 | F019648 | N/A | MNSTELELLDRFAKKYDIDCKPSESQYDFWDFTYEWDDRKFYCEMKKRNFTLDYAKENYTGGLLLEMHKYERILRRAKNEKGSQGLYVNFFDDDKVLIYNLNKVRINKWFWKTMPETTDFGRSKYVYKYITFLDYDKGKVLYI |
Ga0213865_1000056620 | F046021 | N/A | MTKKKLTPKYNDNKSIRARIDKLLEKNTSNVANSGTGSKLDVGDDSKVKEAWQEIQAKIKEIDPVFYDIIKER |
Ga0213865_1000056636 | F009843 | AGG | MKKVELGGQERPIRFSYLALKDICNKCGLKLSEMNQLGSEIDHIGIITFFGLKYGAKKIGEPFNHKISDIEEWLDNEDFSKINEIFEAFQLDQPQSEGK |
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