Scaffold Ga0213865_10000268

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10000268
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34792
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (11.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F018905	Metagenome / Metatranscriptome	232	Y
F038239	Metagenome / Metatranscriptome	166	Y
F039638	Metagenome / Metatranscriptome	163	Y
F049629	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000026819	F049629	N/A	MKDLNDFKNSRIEALTKNKEELERRIAILETWIFELTDEDCPSDYKKVIRTELLK
Ga0213865_1000026820	F038239	N/A	MKSRKRHNFNDFVPTYTDKYTKEMDEEGLNVLKWSMFDSPDVLGSGKMFMESEPVFILDEVFRTERLKGHIYLGYTSKTYADKIGLGLESSHRVGKAIKFKCLNPSKRFRFVRALIQYGIERIKIYDKSIYFDTDNYLKDKELSFRHF
Ga0213865_1000026838	F039638	N/A	MIIRHALDLLAGDDWLIEDKDIQIAKGLYELPTTFKELRTNNKRKKLTNGK
Ga0213865_1000026847	F001728	N/A	MNNVEIKPTKKDYFRLFLNGVDVTGEQERSTFRHILEVIDNGIGTGL
Ga0213865_1000026859	F018905	N/A	MQKKYKINLNLLLKLSNTKKVFLLFNTENEKITNYKLTNDLTRYRLKYQQFRLTEIIKPNINKLTIEI