NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10000268

Scaffold Ga0213865_10000268


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10000268 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34792
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (11.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F018905Metagenome / Metatranscriptome232Y
F038239Metagenome / Metatranscriptome166Y
F039638Metagenome / Metatranscriptome163Y
F049629Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000026819F049629N/AMKDLNDFKNSRIEALTKNKEELERRIAILETWIFELTDEDCPSDYKKVIRTELLK
Ga0213865_1000026820F038239N/AMKSRKRHNFNDFVPTYTDKYTKEMDEEGLNVLKWSMFDSPDVLGSGKMFMESEPVFILDEVFRTERLKGHIYLGYTSKTYADKIGLGLESSHRVGKAIKFKCLNPSKRFRFVRALIQYGIERIKIYDKSIYFDTDNYLKDKELSFRHF
Ga0213865_1000026838F039638N/AMIIRHALDLLAGDDWLIEDKDIQIAKGLYELPTTFKELRTNNKRKKLTNGK
Ga0213865_1000026847F001728N/AMNNVEIKPTKKDYFRLFLNGVDVTGEQERSTFRHILEVIDNGIGTGL
Ga0213865_1000026859F018905N/AMQKKYKINLNLLLKLSNTKKVFLLFNTENEKITNYKLTNDLTRYRLKYQQFRLTEIIKPNINKLTIEI

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