NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10000069

Scaffold Ga0213865_10000069


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10000069 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61076
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (17.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009959Metagenome / Metatranscriptome310Y
F027242Metagenome / Metatranscriptome195Y
F050305Metagenome145Y
F064090Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000006960F064090N/AMYNVNNPSNWSWSKAFAEMEKTVNQAEMTQQCIMILGNSETTEYKNLSKSNQDEVYNLLNQIL
Ga0213865_1000006961F050305N/AMSNKGTTIDKIALSEFDMHYCQLGNNEKQWCHDEMVNNPKWLKKDWEDPLWSMADKWKAGLPIYKTYK
Ga0213865_1000006963F009959N/AMNEEEVIDRICDRVIGTIYNELDYYMFEELGYEETDEEYVKDADKLIKKIIKELNK
Ga0213865_1000006969F027242N/AMKDTNAIEEALRSKCKKEINKVVDVFMNEFEIKIRGEYNGSNYYEFKGPNGKSFHVMGTKQVKNVLFRMISGAYLESMVEVKSRNLIKKLELV

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