Scaffold Ga0213865_10000069

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10000069
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61076
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (17.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009959	Metagenome / Metatranscriptome	310	Y
F027242	Metagenome / Metatranscriptome	195	Y
F050305	Metagenome	145	Y
F064090	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000006960	F064090	N/A	MYNVNNPSNWSWSKAFAEMEKTVNQAEMTQQCIMILGNSETTEYKNLSKSNQDEVYNLLNQIL
Ga0213865_1000006961	F050305	N/A	MSNKGTTIDKIALSEFDMHYCQLGNNEKQWCHDEMVNNPKWLKKDWEDPLWSMADKWKAGLPIYKTYK
Ga0213865_1000006963	F009959	N/A	MNEEEVIDRICDRVIGTIYNELDYYMFEELGYEETDEEYVKDADKLIKKIIKELNK
Ga0213865_1000006969	F027242	N/A	MKDTNAIEEALRSKCKKEINKVVDVFMNEFEIKIRGEYNGSNYYEFKGPNGKSFHVMGTKQVKNVLFRMISGAYLESMVEVKSRNLIKKLELV