Basic Information | |
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Taxon OID | 3300021373 Open in IMG/M |
Scaffold ID | Ga0213865_10000069 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 61076 |
Total Scaffold Genes | 86 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (17.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009959 | Metagenome / Metatranscriptome | 310 | Y |
F027242 | Metagenome / Metatranscriptome | 195 | Y |
F050305 | Metagenome | 145 | Y |
F064090 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213865_1000006960 | F064090 | N/A | MYNVNNPSNWSWSKAFAEMEKTVNQAEMTQQCIMILGNSETTEYKNLSKSNQDEVYNLLNQIL |
Ga0213865_1000006961 | F050305 | N/A | MSNKGTTIDKIALSEFDMHYCQLGNNEKQWCHDEMVNNPKWLKKDWEDPLWSMADKWKAGLPIYKTYK |
Ga0213865_1000006963 | F009959 | N/A | MNEEEVIDRICDRVIGTIYNELDYYMFEELGYEETDEEYVKDADKLIKKIIKELNK |
Ga0213865_1000006969 | F027242 | N/A | MKDTNAIEEALRSKCKKEINKVVDVFMNEFEIKIRGEYNGSNYYEFKGPNGKSFHVMGTKQVKNVLFRMISGAYLESMVEVKSRNLIKKLELV |
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