Scaffold Ga0213863_10278394

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10278394
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 707
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_102783941	F003976	GGAGG	MSRLYNDYYFEKQDILDTLDKLDMSVRLLNVWVNEPMGLENAKYVLEKNANQEFNWFSRDMVKELVEEETYG
Ga0213863_102783942	F059441	GGAGG	MKTWSSTIKYTVFDMGRECETEEEYREWVKETFILDHDIYLRDDEITNIEREELYNE
Ga0213863_102783943	F010571	AGGAGG	MSMNTRQAIYIETLYENFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG