Scaffold Ga0213863_10000468

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000468
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30953
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (96.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005352	Metagenome / Metatranscriptome	403	Y
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F060355	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000046831	F005796	GGAG	MLELAVFMFCTLGCGLTSYHLGKQEGIETTIEHLVDHGMLELDEE
Ga0213863_1000046834	F025150	GGAG	MINVQTEGRDLSKYSSFIDECIMSLFPEDATYDIYFEVKKFVDKDGSHAGFCMGDDIESVISLATHWVYEDGEEIAYEPHELASNIAHELVHAKQFYRGQINMVDNVWKHNNVMIDCDTINYEDLPWEVEAYAYEVILTDLLWENV
Ga0213863_1000046836	F005352	AGGAG	MTHPALDKPYIQLICNPYEHSTSVNTRITIDVMQKDLSRDDMIEVLENFMKSMGYHFNPNECLGIEEHE
Ga0213863_1000046837	F047922	GAGG	MTPQEIVDHKNKWKMANYFESHTHSDLRSEATQWCKDHCFKWRYDIKHFTDIYGDTVKFELEEDFTAFNEWYQERMYG
Ga0213863_1000046858	F060355	GAGG	MKIKDDIQEKWDRGWTIYDIAEYWNTPVENIMKILGIQENPFSYELH