NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10155807

Scaffold Ga0213860_10155807


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10155807 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_101558071F015102N/AMYMLVSEVEDAEDSNAPFDDVTHWVGNLPSKDTHSTKRPVKRYSWWQTKSNVLRSKLGVETKRED
Ga0213860_101558073F029123AGGAMSYEVWFGQNGKWFGYHSFKYRMDAQRYEERYQKVFPDLTVEIREKEHGRHS
Ga0213860_101558074F006217AGGAMIELLLAMVEEQNPIHKYCMSKHDHWTGRAACVQELRHAQRKLEVETLREFLKKNPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKKGRC

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