NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206123_10064427

Scaffold Ga0206123_10064427


Overview

Basic Information
Taxon OID3300021365 Open in IMG/M
Scaffold IDGa0206123_10064427 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1843
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042374Metagenome158Y
F059457Metagenome134Y
F091013Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0206123_100644272F091013GAGMTIKNEINLNSFVIHCKETKYYNVNIKARNYEEAEKRWKNIAKRRDYQTLHNEIEVISITEE
Ga0206123_100644275F042374GGAGMYKTISIIFVLVSIGGCSTMPIVDSRGKSSANIKGDHNRFHDDYFTCKSLVEDQTSAGWNIGKTIYNNLRWKVLWLSPKLDTRTDFVNRCLEGRGYNVINK
Ga0206123_100644276F059457N/APTKIGNTELYTVRVLNMSVAQYYGVVKEYNEIVVATRELNKKELEKNGDKGELNLYYSVRYNLNKLVLEKLKGGK

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