Basic Information | |
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Taxon OID | 3300021365 Open in IMG/M |
Scaffold ID | Ga0206123_10050142 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2169 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012114 | Metagenome | 283 | Y |
F019646 | Metagenome | 228 | Y |
F040582 | Metagenome | 161 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206123_100501421 | F012114 | AGGAG | MSNNNCMMPKVRKNVWVVYDTQGNRIGEVGAMSETEARQKVAQHVMIPFRLSHIEE |
Ga0206123_100501423 | F040582 | GGAG | MGLIELDFQSIVIGYMIGVALMWSICETFYGENNEQRTEKDSKNTRPRYDRRYHMLHGDTPE |
Ga0206123_100501427 | F019646 | AGGA | MSNNFEIYYASDCCGANVHSDTDLCPTCLEHCEVIEERVDYDCSEAVHAAQGLDYFCG |
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