Scaffold Ga0206123_10027072

Overview

Basic Information

• Taxon OID: 3300021365
• Scaffold ID: Ga0206123_10027072
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3277
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015096	Metagenome / Metatranscriptome	257	Y
F045763	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206123_1002707212	F045763	N/A	LFYWSEETINYFKFISSYLSKKQTIRKIELFVEMDCIPAEEETEDMLVQDLINVIYK
Ga0206123_100270723	F015096	GAG	LYINHKDEDNMNYGTQWLARRKELEDKYVELILAKYPLLTDVTTDTQHKNGTRMFELNHKKYGPTRFATYKSGMVRKIIRTRFGELSCYQLNPQRTNTRYYMTLSDNSELNVKSYEGKQRVGITNGLARLVYLEKYLIKNYDLDLVQDVIEVDGILYRKI