NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10028090

Scaffold Ga0213859_10028090


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10028090 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2645
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012529Metagenome / Metatranscriptome280Y
F020815Metagenome222N
F028349Metagenome / Metatranscriptome192Y
F087896Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_100280901F012529AGGAGGMLEDKTYKVKVGDHNDAVIFVYERHRKCLNPDDKPEDQRWKHWKEVVTVIPVNHDFEDYQDTSGDFYTNVRATVDALAELYSSSPDYEMGV
Ga0213859_100280905F087896AGGAGMNYKTKQGAIISDDGYTQVIKQHNLGYGWEATLWDNDRLVITHDATGETLSIPPESTQKLRDIFAAIKKETNNG
Ga0213859_100280907F020815AGGAGGMRLYMNKQGEWVGTQAEAKKIGATMVDVPTDKPNLLKWLNTFTGAIDAAAEEVIENKTKPSGVTLKAHAWDTIMQCARNASIKDLTMALVVYMDRVHDIADQHKETQQ
Ga0213859_100280908F028349AGGAGMQVRTYHKNGKAVQFLGYSDIDAANAAKVVMAEMNDVGYFKPRLGTDECIYDWIYVKEITDEDLKEALGR

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