Scaffold Ga0213859_10028090

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10028090
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100280901	F012529	AGGAGG	MLEDKTYKVKVGDHNDAVIFVYERHRKCLNPDDKPEDQRWKHWKEVVTVIPVNHDFEDYQDTSGDFYTNVRATVDALAELYSSSPDYEMGV
Ga0213859_100280905	F087896	AGGAG	MNYKTKQGAIISDDGYTQVIKQHNLGYGWEATLWDNDRLVITHDATGETLSIPPESTQKLRDIFAAIKKETNNG
Ga0213859_100280907	F020815	AGGAGG	MRLYMNKQGEWVGTQAEAKKIGATMVDVPTDKPNLLKWLNTFTGAIDAAAEEVIENKTKPSGVTLKAHAWDTIMQCARNASIKDLTMALVVYMDRVHDIADQHKETQQ
Ga0213859_100280908	F028349	AGGAG	MQVRTYHKNGKAVQFLGYSDIDAANAAKVVMAEMNDVGYFKPRLGTDECIYDWIYVKEITDEDLKEALGR