Scaffold Ga0213859_10022671

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10022671
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2928
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030088	Metagenome	186	Y
F033798	Metagenome	176	Y
F049552	Metagenome / Metatranscriptome	146	Y
F074752	Metagenome	119	Y
F082690	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100226712	F033798	N/A	MVLDRMMHNEPMRWQGLLMDMETNYISLEAFRKWLAAEWYEKELLKDEFPEFHFLDDDMLVMEMQHELLATLN
Ga0213859_100226713	F030088	GGA	MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFNYYGKLYVPFSAMSVVFNSKGATKRFDKDLDVLVHPTRGRLFQVPKEVEQFVTVV
Ga0213859_100226714	F049552	N/A	MKNKNKEFWNVIAAMDFNGRGHEFAGRWLMEDSGLTFSEIKQIRNTATRKVNVLYDKFINDPNLKIGSDDGFSDVLWQTVANGYQSFHNCTAESLTEMYDEMRYTESFAYAFHIVNEIEDEQFAANQFLKRERAMKHIEEMRKYGGGFDQKLIAAFEHADNNNKRKLAKGFPEIFEHLVD
Ga0213859_100226717	F074752	N/A	MVLVEQETTSISFDQEGDAYFMIGDVVYYLNEFMKVTDGEFDGVTHVTNTGGIGIKIDEVNEEVEYSFFTN
Ga0213859_100226718	F082690	AGCAG	MSKECVMCGGDAGEYGNNPAPLYHEGVCCDECNIEVVSFRIMISQIQ