Scaffold Ga0213859_10008882

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10008882
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4532
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100088824	F093848	N/A	MLTMNEHREQSLYDILDKLSTRLVQLYYVACWETDDQDGMRISGNILYARNFYNE
Ga0213859_100088825	F018906	AGGAG	LKTCKVNPLKLNETRFEAAAHEGGRYVKRYYFSNGLGASVACHSGTYGGNAGYFEVAILKYPLGTDPEITSEIIYDQPINEHLGCVDVIGWRDFFEVADILQQIRNYNTGEYAYNERT
Ga0213859_100088826	F012114	N/A	MVGCRYTNKEKRMTDREYYNCVFPEKRPRNIWVVVDAYNGHKIGEVAAMSETEARQKVAQHVMIPFTLSHIEE
Ga0213859_100088829	F019646	AGG	MSNNFEITYSTDCCGYPCHSDAQICPECLEHCEVIEDRIEYDSPETVAFQSQLDSFGAG