NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213859_10008060

Scaffold Ga0213859_10008060


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10008060 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4724
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F018906Metagenome232Y
F040582Metagenome161Y
F053980Metagenome140Y
F103053Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000806010F018906GAGGMKTCKVNPLKLNETRFDHEAHKGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILQYPIGTDGEITAELIYDTQINKDLGCVDVIGWLDFGGVDATLKQIRNYNTGEYAYNE
Ga0213859_1000806012F053980GGAGMNGYELLEQLKKDVKECFTVPNEWLPEEFRDHRSDSVSLADVERKCDARDRCTLSSFEEDAIERAKRVQVYRSQNDRGLEITYLPR
Ga0213859_100080605F103053GGAGGMNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY
Ga0213859_100080607F040582AGGAGGMGFISIDFQSIVIGYAVGIALMWSLHELLYGDNNNEQRTETDCKHTRPRYDRRYNMLHGDTPE
Ga0213859_100080609F012114AGGAGMKNRDYYNCVFPEKRPRSVWVVYDTQGDKIGEVAAMSENEARQKVAQHVMIPFRLSHIEE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.