Scaffold Ga0213859_10008060

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10008060
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4724
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y
F103053	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000806010	F018906	GAGG	MKTCKVNPLKLNETRFDHEAHKGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILQYPIGTDGEITAELIYDTQINKDLGCVDVIGWLDFGGVDATLKQIRNYNTGEYAYNE
Ga0213859_1000806012	F053980	GGAG	MNGYELLEQLKKDVKECFTVPNEWLPEEFRDHRSDSVSLADVERKCDARDRCTLSSFEEDAIERAKRVQVYRSQNDRGLEITYLPR
Ga0213859_100080605	F103053	GGAGG	MNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY
Ga0213859_100080607	F040582	AGGAGG	MGFISIDFQSIVIGYAVGIALMWSLHELLYGDNNNEQRTETDCKHTRPRYDRRYNMLHGDTPE
Ga0213859_100080609	F012114	AGGAG	MKNRDYYNCVFPEKRPRSVWVVYDTQGDKIGEVAAMSENEARQKVAQHVMIPFRLSHIEE