Basic Information | |
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Taxon OID | 3300021364 Open in IMG/M |
Scaffold ID | Ga0213859_10008060 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4724 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012114 | Metagenome | 283 | Y |
F018906 | Metagenome | 232 | Y |
F040582 | Metagenome | 161 | Y |
F053980 | Metagenome | 140 | Y |
F103053 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213859_1000806010 | F018906 | GAGG | MKTCKVNPLKLNETRFDHEAHKGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILQYPIGTDGEITAELIYDTQINKDLGCVDVIGWLDFGGVDATLKQIRNYNTGEYAYNE |
Ga0213859_1000806012 | F053980 | GGAG | MNGYELLEQLKKDVKECFTVPNEWLPEEFRDHRSDSVSLADVERKCDARDRCTLSSFEEDAIERAKRVQVYRSQNDRGLEITYLPR |
Ga0213859_100080605 | F103053 | GGAGG | MNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY |
Ga0213859_100080607 | F040582 | AGGAGG | MGFISIDFQSIVIGYAVGIALMWSLHELLYGDNNNEQRTETDCKHTRPRYDRRYNMLHGDTPE |
Ga0213859_100080609 | F012114 | AGGAG | MKNRDYYNCVFPEKRPRSVWVVYDTQGDKIGEVAAMSENEARQKVAQHVMIPFRLSHIEE |
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