Scaffold Ga0213859_10007027

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10007027
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5035
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F024204	Metagenome	207	N
F098208	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000702713	F003051	AGGAGG	MKTKILKNKITIEMSNSEYDKLFRYINKLDQMLTTINETNDLWLSDIQNIGDLKWHLVNLLDAEWNPDKYTYIKRGEK
Ga0213859_100070277	F098208	AGGAG	MSNTYTIKEVLKVGNLLDNGTNFKCIKCNESGEMTYQALPSKKYKYGFDYSCGYCGEWQIEEVQKQ
Ga0213859_100070278	F024204	GAGG	MSNYTYTEIVEEGIEVCSSCGSADINFNRNIQDKSKSIDHCFNCDYAEGITTCMPDDLHFYQEAKETLNKLREVHK