NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10004723

Scaffold Ga0213859_10004723


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10004723 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6074
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019648Metagenome228Y
F032280Metagenome180Y
F034992Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000472311F019648N/AVTEKELNLLDRFASKYKIDCVPSEGKYDFWDFTYEWDNRKFYCEMKQRNFTLDTAKSKYPEGLILELHKYERILRKTKNEKSAQGLYINFFNCDSVLVFNLNKTRINNWVWRTMPESTDFGRKTYVYKYITLLDYDKGKVLYI
Ga0213859_1000472312F032280N/AMPDQITLKAINLLREADPNLDEMNSLDKFIAHQSEVIKMYKQFKGHPQAEKLKPRLKVFEESALAFTWVHTQMLAYKREKLLANANEMEMANAVIELKQELDILTKLNKSD
Ga0213859_1000472314F034992N/ATVLTFEETPSVEDVLNSFEEYLQVSEIDGISIDPLNDLKAPNKTSKYDYYYDALSNIRRFIKRHNVMFYLVVHPGTAANRRRNEDGTRPAPNMSDVEFGAMFGNRADNFLVFHRNPQSEKWNVTEIHAQKIKFQKLVGVPTPELTPVCLFYSYSLRRFRYLNENGTLIDPIQETIIKRPTNDIF

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